Support custom header colors and finish theme flattening (issue 209)

James Moger

2013-06-26 c129a913c4fd64558aef4cbad41c4246f5886a97

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@REM arch = x86, amd64, or ia32 
SET ARCH=amd64 
 
@REM Delete the gitblit service 
"%CD%\%ARCH%\gitblit.exe" //DS//gitblit